SNP Profiles matching AMAZ 3/2

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
1._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
2._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
3._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
4._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
5._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
6._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
7._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
8._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
9._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
10._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
11._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
12._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
13._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
14._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
15._AMAZ_3_/2	CC	CC	TT	_	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
16._AMAZ_3_/2	CC	CC	TT	TT	_	TT	TT	CT	CC	AA	GG	CC	AA	CT
17._AMAZ_3_/2	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
18._GC-03-022-2-11	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
19._GC-03-022-2-11	CC	CC	TT	TT	_	TT	TT	CT	CC	AA	GG	CC	AA	CT
20._GC-03-022-2-11	CC	CC	TT	_	AA	TT	TT	CT	CC	AA	GG	CC	AA	CT
21._RUQ_91	CC	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CT	AA	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
1._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
2._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
3._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
4._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
5._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
6._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
7._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
8._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
9._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
10._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
11._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
12._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
13._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
14._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
15._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
16._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
17._AMAZ_3_/2	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
18._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
19._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
20._GC-03-022-2-11	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG
21._RUQ_91	AT	GG	CT	CC	CG	GT	AA	CC	AA	GG	CC	CC	AA	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
1._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
2._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
3._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
4._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
5._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
6._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
7._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
8._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
9._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
10._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
11._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
12._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
13._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
14._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
15._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
16._AMAZ_3_/2	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
17._AMAZ_3_/2	AT	TT	AA	GG	AA	_	GT	AA	AT	GG	X_X	X_X	X_X	X_X
18._GC-03-022-2-11	AT	TT	AA	GG	AA	_	GT	AA	AT	GG	X_X	X_X	X_X	X_X
19._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
20._GC-03-022-2-11	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
21._RUQ_91	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: AMAZ_3_/2

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Mars Center for Cocoa Science, Brazil

Location: 3211 16

Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 5 > FP

Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 14 > F

Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 1 > FP

Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 15

Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 13

Dapeng Zhang, 2016

6._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 12

Dapeng Zhang, 2016

7._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

8._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

9._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

10._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

11._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP2

12._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

13._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

14._AMAZ_3_/2

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P97 225

Dapeng Zhang, 2016

15._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 9

Dapeng Zhang, 2016

16._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 7

Dapeng Zhang, 2016

18._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

19._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

20._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

21._AMAZ_3_/2 RUQ_91

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1458	3	TcSNP1442	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25